Lactococcus raffinolactis strain WiKim0068

Gram-positiveCocciFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Streptococcaceae

Genus

Pseudolactococcus

Description

Lactococcus raffinolactis strain WiKim0068 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic oxygen requirement. This strain has been identified in various habitats, primarily associated with fermented foods, including fermented cabbage, kimchi, meat, milk, vegetables, and fish, as well as fermented seeds. Notably, Lactococcus raffinolactis strain WiKim0068 possesses two replicons, which contribute to its genetic diversity and adaptability in different environments. It has been linked to the plant host Gambeya albida, highlighting its ecological interactions beyond food fermentation. The presence of flagella suggests that this strain may have some motility, which could play a role in its colonization and survival within diverse substrates in its natural habitats. The ability to thrive in both anaerobic and aerobic conditions allows Lactococcus raffinolactis strain WiKim0068 to exploit a wide range of ecological niches in fermented food production. Overall, the traits of Lactococcus raffinolactis strain WiKim0068 underline its importance in fermentation processes and its potential role in the ecological dynamics of microbial communities associated with various fermented foods. Understanding such traits can enhance our knowledge of microbial interactions in food systems and their implications for food preservation and safety.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusPseudolactococcus
SpeciesPseudolactococcus raffinolactis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Lactococcus raffinolactis strain WiKim0068
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfermented cabbage; fermented foods; fermented seeds; fish; kimchi; meat; milk; vegetables
Biotic relationshipNot Available
Host(s)Gambeya albida
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-2,

Gene Summary

Adenine Count

9173 bp

Thymine Count

8366 bp

Guanine Count

5251 bp

Cytosine Count

4275 bp

Genome Length

27065 bp

Protein-coding Genes

28 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family dna-binding transcriptional regulatorCMV25_RS11160Not AvailablePositive215 - 118636026.1
fructokinase scrkCMV25_RS11165Not AvailablePositive1319 - 220031761.2
recombinase family proteinCMV25_RS11170Not AvailableNegative2397 - 26218304.64
recombinase family proteinCMV25_RS11175Not AvailableNegative2621 - 27886424.84
type i restriction endonuclease subunit rCMV25_RS11180Not AvailablePositive2940 - 5927113712.0
type i restriction-modification system subunit mCMV25_RS11185Not AvailablePositive5967 - 751458783.7
restriction endonuclease subunit sCMV25_RS11190Not AvailablePositive7511 - 874946870.3
giy-yig nuclease family proteinCMV25_RS11195Not AvailablePositive8763 - 960832812.9
recombinase family proteinCMV25_RS11440Not AvailablePositive9763 - 98282181.71
s24 family peptidaseCMV25_RS11200Not AvailablePositive10605 - 1102416070.8

Displaying genes 1 – 10 of 79 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.