Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath small subunit | CKY39_RS03090 | Not Available | Negative | 690674 - 691186 | 18375.1 |
| type vi secretion system protein tssa | CKY39_RS03095 | Not Available | Negative | 691236 - 692267 | 36100.8 |
| type vi secretion system lipoprotein tssj | CKY39_RS03100 | Not Available | Positive | 692441 - 692857 | 14750.8 |
| type vi secretion system protein | CKY39_RS03105 | Not Available | Negative | 692877 - 693992 | 39813.4 |
| dotu family type iv/vi secretion system protein | CKY39_RS03110 | Not Available | Negative | 694010 - 695335 | 48070.1 |
| response regulator transcription factor | CKY39_RS03115 | Not Available | Positive | 695589 - 696290 | 24444.9 |
| nudix hydrolase | CKY39_RS03120 | Not Available | Negative | 696299 - 697531 | 44157.9 |
| phosphoglycolate phosphatase | CKY39_RS03125 | Not Available | Positive | 697611 - 698288 | 24035.8 |
| chalcone isomerase family protein | CKY39_RS03130 | Not Available | Negative | 698305 - 698910 | 21516.6 |
| anthranilate synthase component i | CKY39_RS03135 | Not Available | Positive | 699245 - 700747 | 54820.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
