Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2169 domain-containing protein | CKY39_RS03045 | Not Available | Positive | 680410 - 683016 | 93850.1 |
| pentapeptide repeat-containing protein | CKY39_RS03050 | Not Available | Positive | 683013 - 684068 | 37586.3 |
| duf3540 domain-containing protein | CKY39_RS03055 | Not Available | Positive | 684096 - 684767 | 23992.0 |
| duf4150 domain-containing protein | CKY39_RS03060 | Not Available | Positive | 684779 - 685174 | 13407.7 |
| type vi secretion system-associated fha domain protein tagh | CKY39_RS03065 | Not Available | Positive | 685289 - 686965 | 57235.2 |
| hypothetical protein | CKY39_RS34085 | Not Available | Positive | 687009 - 687227 | 7748.06 |
| pp2c family serine/threonine-protein phosphatase | CKY39_RS03070 | Not Available | Positive | 687251 - 687805 | 20020.8 |
| peptidoglycan-binding domain-containing protein | CKY39_RS03075 | Not Available | Negative | 687902 - 688402 | 18540.0 |
| hcp family type vi secretion system effector | CKY39_RS03080 | Not Available | Negative | 688491 - 688970 | 16912.6 |
| type vi secretion system contractile sheath large subunit | CKY39_RS03085 | Not Available | Negative | 689123 - 690616 | 55217.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
