Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CKY39_RS02995 | Not Available | Positive | 665586 - 666335 | 27004.1 |
| hypothetical protein | CKY39_RS03000 | Not Available | Positive | 666363 - 667493 | 39783.3 |
| caspase family protein | CKY39_RS03005 | Not Available | Positive | 667490 - 669508 | 70823.6 |
| type vi secretion system tube protein hcp | CKY39_RS03010 | Not Available | Positive | 669563 - 670120 | 20107.7 |
| type vi secretion system accessory protein tagj | CKY39_RS03015 | Not Available | Positive | 670149 - 670988 | 30563.4 |
| type vi secretion system baseplate subunit tsse | CKY39_RS03020 | Not Available | Positive | 670981 - 671496 | 19338.4 |
| type vi secretion system baseplate subunit tssf | CKY39_RS03025 | Not Available | Positive | 671503 - 673395 | 69352.4 |
| type vi secretion system baseplate subunit tssg | CKY39_RS03030 | Not Available | Positive | 673404 - 674447 | 39503.1 |
| type vi secretion system atpase tssh | CKY39_RS03035 | Not Available | Positive | 674487 - 677180 | 98027.5 |
| type vi secretion system tip protein tssi/vgrg | CKY39_RS03040 | Not Available | Positive | 677221 - 680391 | 112851.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
