Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | CKY39_RS02490 | Not Available | Negative | 550148 - 551482 | 47427.5 |
| tripartite tricarboxylate transporter substrate binding protein | CKY39_RS02495 | Not Available | Negative | 551590 - 552468 | 31304.2 |
| amidase | CKY39_RS02500 | Not Available | Negative | 552635 - 554089 | 51980.6 |
| helix-turn-helix domain-containing protein | CKY39_RS02505 | Not Available | Negative | 554191 - 555186 | 36933.2 |
| marr family winged helix-turn-helix transcriptional regulator | CKY39_RS02510 | Not Available | Negative | 555312 - 555842 | 19385.3 |
| nad-dependent succinate-semialdehyde dehydrogenase | CKY39_RS02515 | Not Available | Positive | 555986 - 557428 | 51503.9 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | CKY39_RS02520 | Not Available | Positive | 557458 - 558837 | 49694.8 |
| tm-1-like atp-binding domain-containing protein | CKY39_RS02525 | Not Available | Positive | 558834 - 560078 | 42940.9 |
| had-ia family hydrolase | CKY39_RS02530 | Not Available | Positive | 560075 - 560749 | 24582.3 |
| transaminase | CKY39_RS02535 | Not Available | Positive | 560761 - 562152 | 50363.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
