Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | CKY39_RS02285 | Not Available | Positive | 500199 - 501203 | 36558.1 |
| abc transporter permease subunit | CKY39_RS02290 | Not Available | Positive | 501208 - 502116 | 31782.6 |
| abc transporter atp-binding protein | CKY39_RS02295 | Not Available | Positive | 502134 - 503159 | 36901.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS02300 | Not Available | Positive | 503156 - 504177 | 37063.2 |
| abc transporter substrate-binding protein | CKY39_RS02305 | Not Available | Positive | 504225 - 505856 | 60724.6 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | CKY39_RS02310 | Not Available | Positive | 505893 - 506633 | 26080.3 |
| yoak family protein | CKY39_RS02315 | Not Available | Negative | 506643 - 507395 | 26637.5 |
| magnesium/cobalt transporter cora | CKY39_RS02320 | Not Available | Negative | 507451 - 508437 | 37880.4 |
| atp-dependent helicase | CKY39_RS02325 | Not Available | Positive | 508663 - 510780 | 77633.8 |
| ribosome hibernation-promoting factor, hpf/yfia family | CKY39_RS02330 | Not Available | Positive | 511101 - 511430 | 12729.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
