Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CKY39_RS02140 | Not Available | Positive | 469359 - 470129 | 29041.5 |
| type ii toxin-antitoxin system vapc family toxin | CKY39_RS02145 | Not Available | Positive | 470126 - 470614 | 17745.2 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS02150 | Not Available | Negative | 470636 - 473755 | 113231.0 |
| single-stranded dna-binding protein | CKY39_RS02155 | Not Available | Positive | 473909 - 474466 | 19425.5 |
| pyridoxal phosphate-dependent aminotransferase | CKY39_RS02160 | Not Available | Positive | 474955 - 476154 | 43458.2 |
| 2-keto-4-pentenoate hydratase | CKY39_RS02165 | Not Available | Positive | 476162 - 476932 | 27284.6 |
| sdr family oxidoreductase | CKY39_RS02170 | Not Available | Positive | 476947 - 477726 | 26879.2 |
| abc transporter atp-binding protein | CKY39_RS02175 | Not Available | Positive | 477793 - 478548 | 27415.4 |
| hypothetical protein | CKY39_RS34670 | Not Available | Positive | 478582 - 478707 | 4383.49 |
| transporter substrate-binding domain-containing protein | CKY39_RS02180 | Not Available | Positive | 478662 - 479369 | 25782.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
