Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gata | CKY39_RS01640 | Not Available | Negative | 355423 - 356913 | 52348.0 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | CKY39_RS01645 | Not Available | Negative | 356913 - 357212 | 10798.9 |
| rod shape-determining protein | CKY39_RS01650 | Not Available | Positive | 357429 - 358472 | 36847.0 |
| rod shape-determining protein mrec | CKY39_RS01655 | Not Available | Positive | 358559 - 359521 | 34211.4 |
| rod shape-determining protein mred | CKY39_RS01660 | Not Available | Positive | 359518 - 360039 | 19145.2 |
| penicillin-binding protein 2 | CKY39_RS01665 | Not Available | Positive | 360098 - 362095 | 72313.5 |
| fumarylacetoacetase | CKY39_RS01670 | Not Available | Negative | 362136 - 363401 | 45041.6 |
| bug family tripartite tricarboxylate transporter substrate binding protein | CKY39_RS01675 | Not Available | Negative | 363428 - 364402 | 33386.6 |
| homogentisate 1,2-dioxygenase | CKY39_RS01680 | Not Available | Negative | 364399 - 365709 | 48033.9 |
| duf2783 domain-containing protein | CKY39_RS01685 | Not Available | Negative | 365756 - 365950 | 6931.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
