Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssk | CKY39_RS01295 | Not Available | Positive | 281143 - 282438 | 47947.8 |
| dotu family type vi secretion system protein | CKY39_RS01300 | Not Available | Positive | 282447 - 283829 | 49805.5 |
| type vi secretion system membrane subunit tssm | CKY39_RS01305 | Not Available | Positive | 283829 - 287464 | 134539.0 |
| type vi secretion system-associated protein tagf | CKY39_RS01310 | Not Available | Positive | 287466 - 288194 | 26233.9 |
| serine/threonine-protein kinase | CKY39_RS01315 | Not Available | Positive | 288231 - 290198 | 69379.5 |
| yifb family mg chelatase-like aaa atpase | CKY39_RS01320 | Not Available | Negative | 290211 - 291755 | 53964.7 |
| torf family putative porin | CKY39_RS01325 | Not Available | Positive | 291973 - 292839 | 30610.9 |
| p-ii family nitrogen regulator | CKY39_RS01330 | Not Available | Positive | 292910 - 293248 | 12288.0 |
| ammonium transporter | CKY39_RS01335 | Not Available | Positive | 293278 - 294702 | 48008.8 |
| smp-30/gluconolactonase/lre family protein | CKY39_RS01340 | Not Available | Positive | 294940 - 295869 | 33893.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
