Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CKY39_RS01250 | Not Available | Positive | 271875 - 272342 | 16631.3 |
| duf2169 domain-containing protein | CKY39_RS34040 | Not Available | Positive | 272348 - 274075 | 64615.5 |
| pentapeptide repeat-containing protein | CKY39_RS34045 | Not Available | Positive | 273961 - 274884 | 33959.2 |
| pentapeptide repeat-containing protein | CKY39_RS01260 | Not Available | Positive | 274881 - 275930 | 39074.8 |
| duf3540 domain-containing protein | CKY39_RS01265 | Not Available | Positive | 275993 - 276655 | 23694.5 |
| duf4150 domain-containing protein | CKY39_RS01270 | Not Available | Positive | 276700 - 277083 | 14255.0 |
| pp2c family protein-serine/threonine phosphatase | CKY39_RS01275 | Not Available | Negative | 277112 - 277909 | 28374.1 |
| type vi secretion system-associated fha domain protein tagh | CKY39_RS01280 | Not Available | Negative | 277902 - 279782 | 65607.0 |
| tssq family t6ss-associated lipoprotein | CKY39_RS01285 | Not Available | Negative | 279838 - 280212 | 13554.1 |
| type vi secretion system lipoprotein tssj | CKY39_RS01290 | Not Available | Positive | 280384 - 280899 | 18883.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
