Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein tssa | CKY39_RS01200 | Not Available | Positive | 258403 - 259488 | 39635.3 |
| type vi secretion system contractile sheath small subunit | CKY39_RS01205 | Not Available | Positive | 259574 - 260140 | 20681.6 |
| type vi secretion system contractile sheath large subunit | CKY39_RS01210 | Not Available | Positive | 260137 - 261645 | 56555.5 |
| hcp family type vi secretion system effector | CKY39_RS01215 | Not Available | Positive | 261697 - 262179 | 17103.1 |
| type vi secretion system accessory protein tagj | CKY39_RS01220 | Not Available | Positive | 262320 - 263192 | 31258.8 |
| type vi secretion system baseplate subunit tsse | CKY39_RS01225 | Not Available | Positive | 263189 - 263734 | 20053.0 |
| type vi secretion system baseplate subunit tssf | CKY39_RS01230 | Not Available | Positive | 263734 - 265605 | 69401.6 |
| type vi secretion system baseplate subunit tssg | CKY39_RS01235 | Not Available | Positive | 265632 - 266762 | 42273.5 |
| type vi secretion system atpase tssh | CKY39_RS01240 | Not Available | Positive | 266759 - 269464 | 97460.0 |
| type vi secretion system vgr family protein | CKY39_RS01245 | Not Available | Positive | 269482 - 271875 | 89373.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
