Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | CKY39_RS16445 | Not Available | Positive | 3557498 - 3560746 | 117577.0 |
| kdo hydroxylase family protein | CKY39_RS16450 | Not Available | Positive | 3560759 - 3561628 | 32708.1 |
| transcription elongation factor grea | CKY39_RS16455 | Not Available | Positive | 3561695 - 3562171 | 17162.3 |
| duf4149 domain-containing protein | CKY39_RS16460 | Not Available | Positive | 3562177 - 3562599 | 15195.1 |
| glycosyltransferase | CKY39_RS16465 | Not Available | Negative | 3562637 - 3563356 | 27650.9 |
| yhby family rna-binding protein | CKY39_RS16470 | Not Available | Negative | 3563398 - 3563877 | 17702.8 |
| rlme family rna methyltransferase | CKY39_RS16475 | Not Available | Positive | 3563911 - 3564579 | 24266.4 |
| atp-dependent zinc metalloprotease ftsh | CKY39_RS16480 | Not Available | Positive | 3564746 - 3566662 | 70092.5 |
| dihydropteroate synthase | CKY39_RS16485 | Not Available | Positive | 3566778 - 3567590 | 28462.4 |
| phosphoglucosamine mutase | CKY39_RS16490 | Not Available | Positive | 3567587 - 3568924 | 47456.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
