Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lrgb family proteinCKY39_RS15865Not AvailablePositive3451268 - 345199624998.7
osmc family proteinCKY39_RS15870Not AvailablePositive3452032 - 345249617245.5
fmn-binding negative transcriptional regulatorCKY39_RS34375Not AvailablePositive3452580 - 345297214353.2
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS34865Not AvailablePositive3452969 - 34530191945.16
hypothetical proteinCKY39_RS34380Not AvailablePositive3453047 - 34532086018.36
lysr family transcriptional regulatorCKY39_RS15880Not AvailableNegative3453230 - 345414434046.7
alpha/beta hydrolaseCKY39_RS15885Not AvailablePositive3454326 - 345520730471.1
efflux rnd transporter periplasmic adaptor subunitCKY39_RS15890Not AvailablePositive3455363 - 345661644251.8
efflux rnd transporter permease subunitCKY39_RS15895Not AvailablePositive3456657 - 3459929116737.0
efflux transporter outer membrane subunitCKY39_RS15900Not AvailablePositive3459955 - 346141851572.2

Displaying genes 3411 – 3420 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.