Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-leuNot AvailableNot AvailablePositive3400775 - 3400865Not Available
duf6806 family proteinCKY39_RS15620Not AvailablePositive3400889 - 340152723491.3
mfs transporterCKY39_RS15625Not AvailablePositive3401559 - 340287546108.9
hypothetical proteinCKY39_RS15630Not AvailableNegative3402883 - 340367129052.8
glutamate racemaseCKY39_RS15635Not AvailableNegative3403688 - 340450027972.3
fumarate hydrataseCKY39_RS15640Not AvailableNegative3404497 - 340605055038.4
glycine betaine/l-proline abc transporter substrate-binding protein proxCKY39_RS15645Not AvailableNegative3406154 - 340716437080.1
glycine betaine/l-proline abc transporter permease prowCKY39_RS15650Not AvailableNegative3407187 - 340837141620.7
glycine betaine/l-proline abc transporter atp-binding protein provCKY39_RS15655Not AvailableNegative3408393 - 340964645142.5
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS15660Not AvailablePositive3410204 - 341160050685.1

Displaying genes 3361 – 3370 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.