Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea abc transporter permease subunit urtc | CKY39_RS14890 | Not Available | Positive | 3250488 - 3251684 | 42999.8 |
| urea abc transporter atp-binding protein urtd | CKY39_RS14895 | Not Available | Positive | 3251706 - 3252449 | 27295.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS14900 | Not Available | Positive | 3252465 - 3253153 | 24470.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS14905 | Not Available | Positive | 3253178 - 3254409 | 43232.6 |
| zinc ribbon domain-containing protein | CKY39_RS14910 | Not Available | Positive | 3254414 - 3254758 | 12213.2 |
| hypothetical protein | CKY39_RS14915 | Not Available | Positive | 3254990 - 3255340 | 11999.9 |
| nad(p)/fad-dependent oxidoreductase | CKY39_RS14920 | Not Available | Negative | 3255402 - 3256526 | 39190.0 |
| bug family tripartite tricarboxylate transporter substrate binding protein | CKY39_RS14925 | Not Available | Negative | 3256532 - 3257509 | 34186.1 |
| rraa family protein | CKY39_RS14930 | Not Available | Negative | 3257551 - 3258243 | 24021.2 |
| hydroxyacid dehydrogenase | CKY39_RS14935 | Not Available | Negative | 3258240 - 3259241 | 34130.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
