Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urea abc transporter permease subunit urtcCKY39_RS14890Not AvailablePositive3250488 - 325168442999.8
urea abc transporter atp-binding protein urtdCKY39_RS14895Not AvailablePositive3251706 - 325244927295.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS14900Not AvailablePositive3252465 - 325315324470.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS14905Not AvailablePositive3253178 - 325440943232.6
zinc ribbon domain-containing proteinCKY39_RS14910Not AvailablePositive3254414 - 325475812213.2
hypothetical proteinCKY39_RS14915Not AvailablePositive3254990 - 325534011999.9
nad(p)/fad-dependent oxidoreductaseCKY39_RS14920Not AvailableNegative3255402 - 325652639190.0
bug family tripartite tricarboxylate transporter substrate binding proteinCKY39_RS14925Not AvailableNegative3256532 - 325750934186.1
rraa family proteinCKY39_RS14930Not AvailableNegative3257551 - 325824324021.2
hydroxyacid dehydrogenaseCKY39_RS14935Not AvailableNegative3258240 - 325924134130.6

Displaying genes 3211 – 3220 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.