Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CKY39_RS14840 | Not Available | Negative | 3239201 - 3239404 | 7249.75 |
| spfh domain-containing protein | CKY39_RS14845 | Not Available | Negative | 3239450 - 3240346 | 32669.8 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS14850 | Not Available | Negative | 3240371 - 3241290 | 32520.0 |
| voc family protein | CKY39_RS14855 | Not Available | Positive | 3241400 - 3241831 | 15996.0 |
| amino acid abc transporter substrate-binding protein | CKY39_RS14860 | Not Available | Positive | 3241926 - 3242756 | 29556.8 |
| tigr04325 family methyltransferase | CKY39_RS14865 | Not Available | Negative | 3242787 - 3243557 | 28606.1 |
| response regulator transcription factor | CKY39_RS14870 | Not Available | Negative | 3243648 - 3244541 | 31352.1 |
| atp-binding protein | CKY39_RS14875 | Not Available | Negative | 3244513 - 3247908 | 123064.0 |
| urea abc transporter substrate-binding protein | CKY39_RS14880 | Not Available | Positive | 3248153 - 3249421 | 45962.0 |
| urea abc transporter permease subunit urtb | CKY39_RS14885 | Not Available | Positive | 3249545 - 3250459 | 32508.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
