Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1266 domain-containing proteinCKY39_RS14160Not AvailablePositive3078320 - 307912029413.8
class i sam-dependent methyltransferaseCKY39_RS14165Not AvailableNegative3079128 - 307995831131.6
sigma-54-dependent fis family transcriptional regulatorCKY39_RS14170Not AvailableNegative3080015 - 308191067594.1
aldehyde dehydrogenaseCKY39_RS14175Not AvailablePositive3082144 - 308366455817.9
duf779 domain-containing proteinCKY39_RS14180Not AvailablePositive3083664 - 308404113657.4
lysr family transcriptional regulatorCKY39_RS14185Not AvailableNegative3084057 - 308497432678.7
yjfi family proteinCKY39_RS14190Not AvailablePositive3085116 - 308553214758.7
pspa/im30 family proteinCKY39_RS14195Not AvailablePositive3085545 - 308627626661.6
hypothetical proteinCKY39_RS14200Not AvailablePositive3086279 - 308663813148.8
ob-fold-containig proteinCKY39_RS14205Not AvailablePositive3086681 - 308732522413.6

Displaying genes 3061 – 3070 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.