Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS13865 | Not Available | Positive | 3016526 - 3018108 | 58271.7 |
| duf1501 domain-containing protein | CKY39_RS13870 | Not Available | Positive | 3018122 - 3019345 | 43712.1 |
| hypothetical protein | CKY39_RS13875 | Not Available | Positive | 3019595 - 3020956 | 43959.5 |
| pp_02802 | CKY39_RS13880 | Not Available | Positive | 3021030 - 3021788 | Not Available |
| amidohydrolase family protein | CKY39_RS13885 | Not Available | Negative | 3021810 - 3022697 | 32724.2 |
| hypothetical protein | CKY39_RS13890 | Not Available | Negative | 3022812 - 3023102 | 10846.8 |
| hypothetical protein | CKY39_RS13895 | Not Available | Positive | 3023260 - 3023460 | 7341.67 |
| bug family tripartite tricarboxylate transporter substrate binding protein | CKY39_RS13900 | Not Available | Negative | 3023476 - 3024471 | 34086.3 |
| m20 aminoacylase family protein | CKY39_RS13905 | Not Available | Negative | 3024513 - 3025733 | 43781.2 |
| lysr family transcriptional regulator | CKY39_RS13910 | Not Available | Positive | 3025872 - 3026843 | 35934.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
