Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iclr family transcriptional regulator c-terminal domain-containing proteinCKY39_RS13820Not AvailableNegative3005690 - 300648429076.1
shikimate dehydrogenase family proteinCKY39_RS13825Not AvailablePositive3006684 - 300760732818.7
shikimate dehydrogenase family proteinCKY39_RS13830Not AvailablePositive3007639 - 300847229559.9
3-carboxy-cis,cis-muconate cycloisomeraseCKY39_RS13835Not AvailablePositive3008489 - 300970342451.2
carboxymuconolactone decarboxylase family proteinCKY39_RS13840Not AvailablePositive3009700 - 301014316200.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS13845Not AvailablePositive3010140 - 301133341894.2
alpha/beta fold hydrolaseCKY39_RS34325Not AvailablePositive3011397 - 301215226636.9
bifunctional sugar phosphate isomerase/epimerase/4-hydroxyphenylpyruvate dioxygenase family proteinCKY39_RS13850Not AvailablePositive3012294 - 301419569101.1
mfs transporterCKY39_RS13855Not AvailablePositive3014246 - 301566751262.9
dsba family oxidoreductaseCKY39_RS13860Not AvailablePositive3015715 - 301638924674.1

Displaying genes 2991 – 3000 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.