Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator c-terminal domain-containing protein | CKY39_RS13820 | Not Available | Negative | 3005690 - 3006484 | 29076.1 |
| shikimate dehydrogenase family protein | CKY39_RS13825 | Not Available | Positive | 3006684 - 3007607 | 32818.7 |
| shikimate dehydrogenase family protein | CKY39_RS13830 | Not Available | Positive | 3007639 - 3008472 | 29559.9 |
| 3-carboxy-cis,cis-muconate cycloisomerase | CKY39_RS13835 | Not Available | Positive | 3008489 - 3009703 | 42451.2 |
| carboxymuconolactone decarboxylase family protein | CKY39_RS13840 | Not Available | Positive | 3009700 - 3010143 | 16200.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS13845 | Not Available | Positive | 3010140 - 3011333 | 41894.2 |
| alpha/beta fold hydrolase | CKY39_RS34325 | Not Available | Positive | 3011397 - 3012152 | 26636.9 |
| bifunctional sugar phosphate isomerase/epimerase/4-hydroxyphenylpyruvate dioxygenase family protein | CKY39_RS13850 | Not Available | Positive | 3012294 - 3014195 | 69101.1 |
| mfs transporter | CKY39_RS13855 | Not Available | Positive | 3014246 - 3015667 | 51262.9 |
| dsba family oxidoreductase | CKY39_RS13860 | Not Available | Positive | 3015715 - 3016389 | 24674.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
