Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycii family protein | CKY39_RS13640 | Not Available | Positive | 2964773 - 2965141 | 13160.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS34735 | Not Available | Positive | 2965234 - 2965704 | 16386.7 |
| mfs transporter | CKY39_RS13645 | Not Available | Positive | 2965713 - 2966720 | 33044.0 |
| hypothetical protein | CKY39_RS13650 | Not Available | Positive | 2966775 - 2966960 | 6855.21 |
| chorismate synthase | CKY39_RS34290 | Not Available | Positive | 2966994 - 2967101 | 3611.27 |
| chorismate synthase | CKY39_RS34740 | Not Available | Positive | 2967080 - 2967547 | 17092.3 |
| chorismate synthase | CKY39_RS34745 | Not Available | Positive | 2967544 - 2968104 | 19489.3 |
| mfs transporter | CKY39_RS13660 | Not Available | Positive | 2968104 - 2969297 | 42878.3 |
| lamg-like jellyroll fold domain-containing protein | CKY39_RS13665 | Not Available | Positive | 2969503 - 2971563 | 74193.5 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | CKY39_RS13670 | Not Available | Negative | 2971597 - 2973243 | 61282.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
