Variovorax boronicumulans strain J1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain J1 is a rod-shaped bacterium identified in an iron-rich wall sinter habitat. This unique environment suggests an adaptation to specific geochemical conditions, likely influencing the bacterium’s metabolic pathways and ecological interactions. The strain is notable for possessing a single replicon, which may reflect its genomic organization and replication strategy. The genomic information for Variovorax boronicumulans strain J1 is available under the accession number NZ_CP023284.1, providing a resource for further genomic studies and comparative analysis with other strains within the Variovorax genus. The ecological role of Variovorax boronicumulans strain J1 in its habitat may involve contributions to biogeochemical cycling, particularly in iron transformation processes. Given its environment, this bacterium could be involved in the oxidation or reduction of iron, impacting mineral formation and the overall microbial community structure in iron-rich systems. Understanding the specific metabolic capabilities and interactions of this strain could provide insights into the ecological dynamics of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain J1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain J1 chromosome, complete genome.

Gene Summary

Adenine Count

1140694 bp

Thymine Count

1142761 bp

Guanine Count

2427426 bp

Cytosine Count

2427017 bp

Genome Length

7137898 bp

Protein-coding Genes

6533 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family dna-binding transcriptional regulatorCKY39_RS13200Not AvailablePositive2862250 - 286327836571.9
gmc family oxidoreductaseCKY39_RS13205Not AvailableNegative2863244 - 286490559363.9
hypothetical proteinCKY39_RS13210Not AvailablePositive2865137 - 286563718354.7
response regulator transcription factorCKY39_RS13215Not AvailablePositive2865716 - 286636322803.7
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeCKY39_RS13220Not AvailableNegative2866374 - 286736233970.9
agmatine deiminase family proteinCKY39_RS13225Not AvailableNegative2867508 - 286867140964.1
lysr family transcriptional regulatorCKY39_RS13230Not AvailableNegative2868749 - 286966933652.6
agmatine/peptidylarginine deiminaseCKY39_RS13235Not AvailablePositive2869741 - 287080839021.6
hybrid sensor histidine kinase/response regulatorCKY39_RS13240Not AvailableNegative2870805 - 287255062828.9
murr/rpir family transcriptional regulatorCKY39_RS13245Not AvailablePositive2872711 - 287354730285.1

Displaying genes 2861 – 2870 of 6745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.