Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf11 domain-containing protein | CKY39_RS11280 | Not Available | Positive | 2487624 - 2488214 | 19927.2 |
| beta strand repeat-containing protein | CKY39_RS11285 | Not Available | Positive | 2488395 - 2491322 | 95874.3 |
| ompa family protein | CKY39_RS11290 | Not Available | Positive | 2491510 - 2499108 | 265493.0 |
| glycine-rich domain-containing protein | CKY39_RS11295 | Not Available | Positive | 2499117 - 2499575 | 14616.4 |
| hypothetical protein | CKY39_RS11300 | Not Available | Positive | 2499572 - 2506288 | 215582.0 |
| iclr family transcriptional regulator | CKY39_RS11305 | Not Available | Negative | 2506305 - 2507087 | 27666.7 |
| trap transporter substrate-binding protein | CKY39_RS11310 | Not Available | Positive | 2507228 - 2508235 | 36671.2 |
| thua domain-containing protein | CKY39_RS11315 | Not Available | Positive | 2508391 - 2509455 | 37874.4 |
| pqq-binding-like beta-propeller repeat protein | CKY39_RS11320 | Not Available | Positive | 2509547 - 2511772 | 78114.0 |
| pyrroloquinoline quinone biosynthesis protein pqqb | CKY39_RS11330 | Not Available | Positive | 2511942 - 2512862 | 32854.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
