Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | CKY39_RS07745 | Not Available | Positive | 1713871 - 1715961 | 73493.5 |
| smr/muts family protein | CKY39_RS07750 | Not Available | Negative | 1715990 - 1716655 | 24110.1 |
| radc family protein | CKY39_RS07755 | Not Available | Negative | 1716655 - 1717332 | 24527.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | CKY39_RS07760 | Not Available | Positive | 1717440 - 1717883 | 15672.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CKY39_RS07765 | Not Available | Positive | 1717880 - 1718848 | 34979.9 |
| threonine/serine dehydratase | CKY39_RS07770 | Not Available | Positive | 1718854 - 1719810 | 33048.9 |
| serine--trna ligase | CKY39_RS07775 | Not Available | Positive | 1719874 - 1721205 | 48314.8 |
| Trna-ser | Not Available | Not Available | Positive | 1721263 - 1721352 | Not Available |
| hypothetical protein | CKY39_RS34170 | Not Available | Positive | 1721888 - 1722103 | 7477.2 |
| hypothetical protein | CKY39_RS34705 | Not Available | Positive | 1722279 - 1722410 | 4749.62 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
