Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system death-on-curing family toxin | CKY39_RS06860 | Not Available | Positive | 1526273 - 1526677 | 14562.1 |
| helix-turn-helix domain-containing protein | CKY39_RS06865 | Not Available | Positive | 1526811 - 1527749 | 34452.2 |
| amidase | CKY39_RS06870 | Not Available | Positive | 1527902 - 1529302 | 49633.0 |
| urease subunit alpha | CKY39_RS06875 | Not Available | Negative | 1529307 - 1531025 | 60956.9 |
| urease subunit beta | CKY39_RS06880 | Not Available | Negative | 1531029 - 1531334 | 11038.1 |
| hupe/urej family protein | CKY39_RS06885 | Not Available | Negative | 1531342 - 1531941 | 20039.2 |
| urease subunit gamma | CKY39_RS06890 | Not Available | Negative | 1531971 - 1532273 | 10877.4 |
| atp-binding protein | CKY39_RS06895 | Not Available | Positive | 1532352 - 1536002 | 131678.0 |
| response regulator transcription factor | CKY39_RS06900 | Not Available | Positive | 1536023 - 1537030 | 36595.2 |
| hypothetical protein | CKY39_RS06905 | Not Available | Positive | 1537115 - 1537807 | 24142.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
