Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class v-fold plp-dependent enzyme | CKY39_RS06510 | Not Available | Positive | 1457158 - 1458480 | 47794.1 |
| c-type cytochrome | CKY39_RS06515 | Not Available | Negative | 1458467 - 1458841 | 13294.0 |
| ferritin-like domain-containing protein | CKY39_RS06520 | Not Available | Negative | 1458871 - 1459440 | 19562.7 |
| rna polymerase sigma factor | CKY39_RS06525 | Not Available | Negative | 1459478 - 1460173 | 25728.4 |
| duf6306 domain-containing protein | CKY39_RS06530 | Not Available | Negative | 1460231 - 1460833 | 21631.8 |
| lysr family transcriptional regulator | CKY39_RS06535 | Not Available | Positive | 1460932 - 1461819 | 31937.4 |
| type vi secretion system vgr family protein | CKY39_RS06540 | Not Available | Positive | 1461943 - 1464990 | 107910.0 |
| duf4123 domain-containing protein | CKY39_RS06545 | Not Available | Positive | 1464997 - 1465836 | 30572.7 |
| duf3304 domain-containing protein | CKY39_RS06550 | Not Available | Positive | 1465859 - 1466620 | 28738.3 |
| t6ss phospholipase effector tle1-like catalytic domain-containing protein | CKY39_RS06555 | Not Available | Positive | 1466617 - 1468671 | 76969.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
