Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | CKY39_RS05800 | Not Available | Positive | 1294180 - 1294728 | 20097.1 |
| 3-dehydroquinate synthase | CKY39_RS05805 | Not Available | Positive | 1294762 - 1295886 | 39745.3 |
| deoxyguanosinetriphosphate triphosphohydrolase | CKY39_RS05810 | Not Available | Positive | 1295883 - 1297019 | 42536.4 |
| cynx/nimt family mfs transporter | CKY39_RS05815 | Not Available | Positive | 1297016 - 1298296 | 43457.0 |
| duf1415 domain-containing protein | CKY39_RS05820 | Not Available | Positive | 1298293 - 1298868 | 20991.7 |
| class i sam-dependent methyltransferase | CKY39_RS05825 | Not Available | Positive | 1298883 - 1299764 | 32567.3 |
| transposase | CKY39_RS05830 | Not Available | Positive | 1299794 - 1300495 | 26236.3 |
| glutamate synthase-related protein | CKY39_RS05835 | Not Available | Positive | 1300674 - 1305419 | 172487.0 |
| glutamate synthase subunit beta | CKY39_RS05840 | Not Available | Positive | 1305455 - 1306933 | 53771.1 |
| abc transporter atp-binding protein | CKY39_RS05845 | Not Available | Positive | 1307000 - 1307863 | 30985.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
