Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite oxidase heme-binding subunit yedz | CKY39_RS05750 | Not Available | Positive | 1283874 - 1284527 | 24489.9 |
| diaminopimelate decarboxylase | CKY39_RS05755 | Not Available | Negative | 1284535 - 1285812 | 45537.7 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS34825 | Not Available | Negative | 1285967 - 1286059 | 3146.05 |
| iron donor protein cyay | CKY39_RS05765 | Not Available | Positive | 1286072 - 1286404 | 12180.2 |
| penicillin-binding protein 1a | CKY39_RS05770 | Not Available | Negative | 1286427 - 1288769 | 84786.4 |
| pilus assembly protein pilm | CKY39_RS05775 | Not Available | Positive | 1289088 - 1290167 | 38987.7 |
| piln domain-containing protein | CKY39_RS05780 | Not Available | Positive | 1290164 - 1290784 | 22935.8 |
| type 4a pilus biogenesis protein pilo | CKY39_RS05785 | Not Available | Positive | 1290791 - 1291471 | 25317.4 |
| pilus assembly protein pilp | CKY39_RS05790 | Not Available | Positive | 1291468 - 1292010 | 20201.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS05795 | Not Available | Positive | 1292007 - 1294156 | 75990.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
