Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | CKY39_RS04920 | Not Available | Positive | 1092720 - 1093730 | 36243.4 |
| abc transporter atp-binding protein | CKY39_RS04925 | Not Available | Positive | 1093831 - 1094634 | 29730.0 |
| abc transporter permease | CKY39_RS04930 | Not Available | Positive | 1094631 - 1095500 | 31757.5 |
| histidinol-phosphatase | CKY39_RS04935 | Not Available | Positive | 1095600 - 1096376 | 27304.6 |
| duf2905 domain-containing protein | CKY39_RS04940 | Not Available | Positive | 1096386 - 1096580 | 7296.31 |
| rok family protein | CKY39_RS04945 | Not Available | Positive | 1096621 - 1097547 | 31808.0 |
| plp-dependent aminotransferase family protein | CKY39_RS04950 | Not Available | Negative | 1097520 - 1099034 | 55551.9 |
| hypothetical protein | CKY39_RS04955 | Not Available | Positive | 1099207 - 1099542 | 11894.4 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | CKY39_RS04960 | Not Available | Negative | 1099582 - 1101012 | 49545.4 |
| duf6279 family lipoprotein | CKY39_RS04965 | Not Available | Positive | 1101011 - 1101910 | 33768.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
