Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ypjd | CKY39_RS04815 | Not Available | Negative | 1070338 - 1071150 | 28742.7 |
| signal recognition particle protein | CKY39_RS04820 | Not Available | Positive | 1071312 - 1072706 | 49849.6 |
| ankyrin repeat domain-containing protein | CKY39_RS04825 | Not Available | Positive | 1072754 - 1073089 | 12202.5 |
| glucans biosynthesis glucosyltransferase mdoh | CKY39_RS04830 | Not Available | Negative | 1073180 - 1075198 | 73470.6 |
| hypothetical protein | CKY39_RS04835 | Not Available | Negative | 1075207 - 1075407 | 7083.47 |
| sigma 54-interacting transcriptional regulator | CKY39_RS04840 | Not Available | Negative | 1075601 - 1076989 | 50309.7 |
| hypothetical protein | CKY39_RS04845 | Not Available | Negative | 1076986 - 1077594 | 21581.9 |
| sensor histidine kinase | CKY39_RS04850 | Not Available | Negative | 1077679 - 1079106 | 52238.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | CKY39_RS04855 | Not Available | Negative | 1079106 - 1080464 | 50160.2 |
| hypothetical protein | CKY39_RS04860 | Not Available | Negative | 1080554 - 1081012 | 16462.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
