Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax boronicumulans |
| Strain | strain J1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | iron-rich wall sinter |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1140694 bp
Thymine Count
1142761 bp
Guanine Count
2427426 bp
Cytosine Count
2427017 bp
Genome Length
7137898 bp
Protein-coding Genes
6533 genes
Non-Coding Genes
212 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxyacid dehydrogenase | CKY39_RS04075 | Not Available | Positive | 912580 - 913518 | 33209.1 |
| tonb-dependent siderophore receptor | CKY39_RS04080 | Not Available | Negative | 913540 - 916062 | 90708.2 |
| fecr domain-containing protein | CKY39_RS04085 | Not Available | Negative | 916191 - 917207 | 36746.9 |
| sigma-70 family rna polymerase sigma factor | CKY39_RS04090 | Not Available | Negative | 917214 - 917717 | 18806.0 |
| amidase | CKY39_RS04095 | Not Available | Negative | 917793 - 919247 | 52489.6 |
| lysr substrate-binding domain-containing protein | CKY39_RS04100 | Not Available | Positive | 919309 - 920298 | 36235.6 |
| amino acid abc transporter substrate-binding protein | CKY39_RS04105 | Not Available | Positive | 920682 - 921581 | 32259.5 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CKY39_RS04110 | Not Available | Positive | 921678 - 922408 | 26871.5 |
| amino acid abc transporter permease | CKY39_RS04115 | Not Available | Positive | 922410 - 923099 | 25573.0 |
| amino acid abc transporter atp-binding protein | CKY39_RS04120 | Not Available | Positive | 923144 - 923881 | 27131.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
