Sphingobium xenophagum strain C1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium xenophagum strain C1 is characterized by the presence of flagella, indicating its motility and ability to navigate its environment effectively. This trait is significant for its ecological interactions, potentially facilitating colonization in various habitats. The strain possesses a complex genomic architecture with five replicons, suggesting a robust capability for genetic adaptability and resilience. The genomic data for Sphingobium xenophagum strain C1 can be accessed through several accession numbers: NZ_CP022746.1, NZ_CP022747.1, NZ_CP022749.1, NZ_CP022751.1, and NZ_CP022748.1. These replicons may contribute to diverse metabolic pathways, which are essential for the strain’s survival in varied environments, including those contaminated with pollutants. The presence of flagella not only aids in mobility but may also play a role in biofilm formation, which is crucial for microbial communities in natural and anthropogenic environments. This suggests that Sphingobium xenophagum strain C1 could be an important player in bioremediation processes, as its motility and genomic flexibility may enhance its ability to degrade environmental contaminants. Thus, the combination of motility and a multi-replicon genome positions this strain as a potentially valuable organism in ecological and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium xenophagum
Strainstrain C1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium xenophagum strain C1


Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

230 genes

Non-Coding Genes

31 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCJD35_RS19685Not AvailableNegative56296 - 5759147984.7
lytic transglycosylase domain-containing proteinCJD35_RS19690Not AvailablePositive57702 - 5866734769.8
hypothetical proteinCJD35_RS19695Not AvailableNegative58706 - 5920018720.9
hypothetical proteinCJD35_RS19700Not AvailableNegative59352 - 5967211923.2
is5 family transposaseCJD35_RS19705Not AvailablePositive59840 - 6066131319.1
trbc/virb2 family proteinCJD35_RS19710Not AvailablePositive61119 - 6143910517.0
type iv conjugative transfer system protein tralCJD35_RS19715Not AvailablePositive61499 - 6178910685.3
type iv conjugative transfer system protein traeCJD35_RS19720Not AvailablePositive61791 - 6237221539.0
type-f conjugative transfer system secretin trakCJD35_RS19725Not AvailablePositive62369 - 6320529358.9
trab/virb10 family proteinCJD35_RS19730Not AvailablePositive63210 - 6454747081.5

Displaying genes 61 – 70 of 1414 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.