Sphingobium xenophagum strain C1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium xenophagum strain C1 is characterized by the presence of flagella, indicating its motility and ability to navigate its environment effectively. This trait is significant for its ecological interactions, potentially facilitating colonization in various habitats. The strain possesses a complex genomic architecture with five replicons, suggesting a robust capability for genetic adaptability and resilience. The genomic data for Sphingobium xenophagum strain C1 can be accessed through several accession numbers: NZ_CP022746.1, NZ_CP022747.1, NZ_CP022749.1, NZ_CP022751.1, and NZ_CP022748.1. These replicons may contribute to diverse metabolic pathways, which are essential for the strain’s survival in varied environments, including those contaminated with pollutants. The presence of flagella not only aids in mobility but may also play a role in biofilm formation, which is crucial for microbial communities in natural and anthropogenic environments. This suggests that Sphingobium xenophagum strain C1 could be an important player in bioremediation processes, as its motility and genomic flexibility may enhance its ability to degrade environmental contaminants. Thus, the combination of motility and a multi-replicon genome positions this strain as a potentially valuable organism in ecological and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium xenophagum
Strainstrain C1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium xenophagum strain C1 plasmid p2, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

262 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
allantoate amidohydrolaseCJD35_RS17400Not AvailablePositive560478 - 56171342496.2
pyridoxal-phosphate-dependent aminotransferase family proteinCJD35_RS17405Not AvailablePositive561700 - 56293843924.3
allantoinase puueCJD35_RS17410Not AvailablePositive563102 - 56397132118.0
oxalurate catabolism protein hpxzCJD35_RS17415Not AvailablePositive563968 - 56434814059.5
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylaseCJD35_RS17420Not AvailablePositive564345 - 56478515923.8
fad/nad(p)-binding proteinCJD35_RS17425Not AvailablePositive564782 - 56620051158.1
hydroxyisourate hydrolaseCJD35_RS17430Not AvailablePositive566197 - 56652911634.9
xanthine dehydrogenase small subunitCJD35_RS17435Not AvailablePositive566531 - 56795850123.0
xanthine dehydrogenase molybdopterin binding subunitCJD35_RS17440Not AvailablePositive567951 - 57026082320.0
xanthine dehydrogenase accessory protein xdhcCJD35_RS17445Not AvailablePositive570257 - 57117732795.5

Displaying genes 1051 – 1060 of 1414 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.