Sphingobium xenophagum strain C1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium xenophagum strain C1 is characterized by the presence of flagella, indicating its motility and ability to navigate its environment effectively. This trait is significant for its ecological interactions, potentially facilitating colonization in various habitats. The strain possesses a complex genomic architecture with five replicons, suggesting a robust capability for genetic adaptability and resilience. The genomic data for Sphingobium xenophagum strain C1 can be accessed through several accession numbers: NZ_CP022746.1, NZ_CP022747.1, NZ_CP022749.1, NZ_CP022751.1, and NZ_CP022748.1. These replicons may contribute to diverse metabolic pathways, which are essential for the strain’s survival in varied environments, including those contaminated with pollutants. The presence of flagella not only aids in mobility but may also play a role in biofilm formation, which is crucial for microbial communities in natural and anthropogenic environments. This suggests that Sphingobium xenophagum strain C1 could be an important player in bioremediation processes, as its motility and genomic flexibility may enhance its ability to degrade environmental contaminants. Thus, the combination of motility and a multi-replicon genome positions this strain as a potentially valuable organism in ecological and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium xenophagum
Strainstrain C1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium xenophagum strain C1 plasmid p2, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

262 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphotransferase enzyme family proteinCJD35_RS17205Not AvailablePositive517014 - 51800937445.6
abc transporter atp-binding proteinCJD35_RS17210Not AvailableNegative518059 - 51962955018.1
type 1 glutamine amidotransferaseCJD35_RS17215Not AvailableNegative519574 - 52040129969.4
duf3237 family proteinCJD35_RS17220Not AvailablePositive520494 - 52106620520.5
gntr family transcriptional regulatorCJD35_RS17225Not AvailableNegative521080 - 52182027609.4
nad(p)/fad-dependent oxidoreductaseCJD35_RS17230Not AvailablePositive522073 - 52276525490.0
is21 family transposaseCJD35_RS17235Not AvailablePositive522841 - 52435557558.9
is21-like element helper atpase istbCJD35_RS17240Not AvailablePositive524342 - 52507027070.8
glutathione s-transferase c-terminal domain-containing proteinCJD35_RS17245Not AvailablePositive525290 - 52579018735.6
indolepyruvate ferredoxin oxidoreductase family proteinCJD35_RS17250Not AvailableNegative525848 - 529300123617.0

Displaying genes 1011 – 1020 of 1414 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.