Sphingorhabdus sp. YGSMI21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. YGSMI21 is characterized by having two replicons, which is a notable trait among bacteria, as it may indicate a complex genetic organization. The genome of this species is accessible through specific accession numbers: NZ_CP022548.1 and NZ_CP022549.1. These accessions provide a basis for further genomic studies and understanding of the organism's biological characteristics. The presence of two replicons can suggest a certain degree of metabolic versatility and adaptability, as dual replicons may allow for the regulation of different sets of genes under varying environmental conditions. This genetic feature can be particularly advantageous in fluctuating environments where resource acquisition and survival strategies are critical. In terms of ecological significance, Sphingorhabdus sp. YGSMI21 may play a role in the microbiome of its habitat, contributing to nutrient cycling or other ecological processes. The genetic attributes associated with its dual replicons could enable it to interact with other microbial communities effectively, potentially influencing microbial dynamics and ecosystem functions. Further investigation into its metabolic pathways and interactions within its environment could yield insights into its ecological roles and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. YGSMI21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. YGSMI21 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

43962 bp

Thymine Count

46506 bp

Guanine Count

53719 bp

Cytosine Count

52392 bp

Genome Length

196579 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gfo/idh/moca family oxidoreductaseCHN51_RS00890Not AvailableNegative196323 - 19726134513.9
class iii extradiol dioxygenase subunit betaCHN51_RS00895Not AvailableNegative197281 - 19812331217.2
protocatechuate 4,5-dioxygenase subunit alphaCHN51_RS00900Not AvailableNegative198125 - 19853215425.2
aromatic ring-hydroxylating dioxygenase subunit alphaCHN51_RS00905Not AvailableNegative198529 - 19955438496.8
amidohydrolase family proteinCHN51_RS00910Not AvailableNegative199551 - 20057338097.2
nad(p)-dependent oxidoreductaseCHN51_RS00915Not AvailableNegative200570 - 20135226931.3
lysr family transcriptional regulatorCHN51_RS00920Not AvailableNegative201424 - 20256941535.3
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseCHN51_RS00925Not AvailablePositive202669 - 20334323888.7
4-oxalomesaconate tautomeraseCHN51_RS00930Not AvailablePositive203336 - 20440337323.7
amidohydrolase family proteinCHN51_RS00935Not AvailablePositive204400 - 20528732715.7

Displaying genes 421 – 430 of 3914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.