Sphingorhabdus sp. YGSMI21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. YGSMI21 is characterized by having two replicons, which is a notable trait among bacteria, as it may indicate a complex genetic organization. The genome of this species is accessible through specific accession numbers: NZ_CP022548.1 and NZ_CP022549.1. These accessions provide a basis for further genomic studies and understanding of the organism's biological characteristics. The presence of two replicons can suggest a certain degree of metabolic versatility and adaptability, as dual replicons may allow for the regulation of different sets of genes under varying environmental conditions. This genetic feature can be particularly advantageous in fluctuating environments where resource acquisition and survival strategies are critical. In terms of ecological significance, Sphingorhabdus sp. YGSMI21 may play a role in the microbiome of its habitat, contributing to nutrient cycling or other ecological processes. The genetic attributes associated with its dual replicons could enable it to interact with other microbial communities effectively, potentially influencing microbial dynamics and ecosystem functions. Further investigation into its metabolic pathways and interactions within its environment could yield insights into its ecological roles and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. YGSMI21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. YGSMI21 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

43962 bp

Thymine Count

46506 bp

Guanine Count

53719 bp

Cytosine Count

52392 bp

Genome Length

196579 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta hydrolaseCHN51_RS08285Not AvailableNegative1700661 - 170149730144.0
polysaccharide lyase family 1 proteinCHN51_RS08290Not AvailableNegative1701705 - 170308449550.8
tonb-dependent receptorCHN51_RS08295Not AvailablePositive1703325 - 1706078100112.0
laci family dna-binding transcriptional regulatorCHN51_RS08300Not AvailableNegative1706280 - 170733238472.3
2-keto-4-pentenoate hydrataseCHN51_RS08305Not AvailablePositive1707524 - 170831227895.9
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseCHN51_RS08310Not AvailablePositive1708373 - 170902622420.2
sugar kinaseCHN51_RS08315Not AvailablePositive1709042 - 171007337645.3
trap transporter substrate-binding proteinCHN51_RS08320Not AvailablePositive1710126 - 171117538942.7
trap transporter small permeaseCHN51_RS08325Not AvailablePositive1711168 - 171169819297.0
trap transporter large permeaseCHN51_RS08330Not AvailablePositive1711695 - 171297844521.7

Displaying genes 1871 – 1880 of 3914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.