Sphingorhabdus sp. YGSMI21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. YGSMI21 is characterized by having two replicons, which is a notable trait among bacteria, as it may indicate a complex genetic organization. The genome of this species is accessible through specific accession numbers: NZ_CP022548.1 and NZ_CP022549.1. These accessions provide a basis for further genomic studies and understanding of the organism's biological characteristics. The presence of two replicons can suggest a certain degree of metabolic versatility and adaptability, as dual replicons may allow for the regulation of different sets of genes under varying environmental conditions. This genetic feature can be particularly advantageous in fluctuating environments where resource acquisition and survival strategies are critical. In terms of ecological significance, Sphingorhabdus sp. YGSMI21 may play a role in the microbiome of its habitat, contributing to nutrient cycling or other ecological processes. The genetic attributes associated with its dual replicons could enable it to interact with other microbial communities effectively, potentially influencing microbial dynamics and ecosystem functions. Further investigation into its metabolic pathways and interactions within its environment could yield insights into its ecological roles and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. YGSMI21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. YGSMI21 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

43962 bp

Thymine Count

46506 bp

Guanine Count

53719 bp

Cytosine Count

52392 bp

Genome Length

196579 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorCHN51_RS20290Not AvailablePositive783607 - 78419721058.4
sulfatase-like hydrolase/transferaseCHN51_RS03760Not AvailablePositive784306 - 78628572555.3
dna-directed rna polymerase subunit betaCHN51_RS03765Not AvailablePositive786564 - 790958163046.0
dna-directed rna polymerase subunit beta'CHN51_RS03770Not AvailablePositive791022 - 795425161548.0
mannan-binding lectinCHN51_RS03775Not AvailableNegative795524 - 79639032335.8
fmn-dependent nadh-azoreductaseCHN51_RS03780Not AvailableNegative796532 - 79711320593.6
pirin family proteinCHN51_RS03785Not AvailableNegative797207 - 79792326607.2
lysr family transcriptional regulatorCHN51_RS03790Not AvailablePositive798050 - 79894032223.9
lyse family translocatorCHN51_RS03795Not AvailablePositive799161 - 79984123650.4
m48 family metallopeptidaseCHN51_RS03800Not AvailablePositive799848 - 80086737181.2

Displaying genes 991 – 1000 of 3914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.