Paraphotobacterium marinum strain NSCS20N07D

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Paraphotobacterium

Description

Paraphotobacterium marinum strain NSCS20N07D is characterized by having three distinct replicons, which indicates a complex genomic structure that may contribute to its adaptability and metabolic versatility. The strain is cataloged under three accession numbers: NZ_CP022355.1, NZ_CP022357.1, and NZ_CP022356.1, which provide a means for researchers to access its genomic data for further study. As a member of the Paraphotobacterium genus, this strain is likely to possess traits that enable it to thrive in marine environments. While specific ecological roles or behaviors of Paraphotobacterium marinum strain NSCS20N07D are not detailed, the presence of multiple replicons may suggest an evolutionary advantage, allowing for diverse genetic adaptations necessary for survival in fluctuating marine conditions. In summary, the genomic complexity of Paraphotobacterium marinum strain NSCS20N07D, as indicated by its three replicons and associated accessions, suggests that it may play a significant role in marine ecosystems. Its potential adaptability could have implications for nutrient cycling and interactions with other marine microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusParaphotobacterium
SpeciesParaphotobacterium marinum
Strainstrain NSCS20N07D

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete

Gene Summary

Adenine Count

1894 bp

Thymine Count

1694 bp

Guanine Count

995 bp

Cytosine Count

956 bp

Genome Length

5539 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive561752 - 561867Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive561959 - 564850Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive565067 - 566608Not Available
gamma carbonic anhydrase family proteinCF386_RS03090Not AvailablePositive566888 - 56734616956.2
shikimate dehydrogenaseCF386_RS03095Not AvailableNegative567392 - 56824032002.4
oxygen-dependent coproporphyrinogen oxidaseCF386_RS03100Not AvailableNegative568247 - 56915835780.4
sua5/ycio/yrdc/ywlc family proteinCF386_RS03105Not AvailableNegative569174 - 56960516333.9
sua5/ycio/yrdc/ywlc family proteinCF386_RS13300Not AvailableNegative569596 - 5697304894.85
5-(carboxyamino)imidazole ribonucleotide mutaseCF386_RS03115Not AvailableNegative569788 - 57028817202.0
duf494 family proteinCF386_RS03120Not AvailableNegative570359 - 57083218685.5

Displaying genes 1681 – 1690 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.