Paraphotobacterium marinum strain NSCS20N07D

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Paraphotobacterium

Description

Paraphotobacterium marinum strain NSCS20N07D is characterized by having three distinct replicons, which indicates a complex genomic structure that may contribute to its adaptability and metabolic versatility. The strain is cataloged under three accession numbers: NZ_CP022355.1, NZ_CP022357.1, and NZ_CP022356.1, which provide a means for researchers to access its genomic data for further study. As a member of the Paraphotobacterium genus, this strain is likely to possess traits that enable it to thrive in marine environments. While specific ecological roles or behaviors of Paraphotobacterium marinum strain NSCS20N07D are not detailed, the presence of multiple replicons may suggest an evolutionary advantage, allowing for diverse genetic adaptations necessary for survival in fluctuating marine conditions. In summary, the genomic complexity of Paraphotobacterium marinum strain NSCS20N07D, as indicated by its three replicons and associated accessions, suggests that it may play a significant role in marine ecosystems. Its potential adaptability could have implications for nutrient cycling and interactions with other marine microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusParaphotobacterium
SpeciesParaphotobacterium marinum
Strainstrain NSCS20N07D

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete

Gene Summary

Adenine Count

1894 bp

Thymine Count

1694 bp

Guanine Count

995 bp

Cytosine Count

956 bp

Genome Length

5539 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide heptosyltransferase iiCF386_RS02825Not AvailablePositive512401 - 51343239051.3
3-deoxy-d-manno-octulosonic acid transferaseCF386_RS02830Not AvailablePositive513441 - 51472149315.7
3-deoxy-d-manno-octulosonic acid kinaseCF386_RS02835Not AvailableNegative514709 - 51540727811.5
glycosyltransferase family 9 proteinCF386_RS02840Not AvailablePositive515449 - 51651340418.6
pantetheine-phosphate adenylyltransferaseCF386_RS02845Not AvailablePositive516538 - 51701417818.8
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseCF386_RS02850Not AvailableNegative517016 - 51782531058.0
50s ribosomal protein l33CF386_RS02855Not AvailableNegative517917 - 5180846381.98
50s ribosomal protein l28CF386_RS02860Not AvailableNegative518099 - 5183359029.09
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcCF386_RS02865Not AvailablePositive518556 - 51979145102.0
dutp diphosphataseCF386_RS02870Not AvailablePositive519803 - 52025516186.4

Displaying genes 1631 – 1640 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.