Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine triad nucleotide-binding protein | CE139_RS04480 | Not Available | Negative | 970128 - 970469 | 12590.3 |
| sdr family nad(p)-dependent oxidoreductase | CE139_RS04485 | Not Available | Negative | 970551 - 971339 | 28473.1 |
| protoporphyrinogen oxidase hemj | CE139_RS04490 | Not Available | Negative | 971388 - 971813 | 16507.0 |
| iron-sulfur cluster insertion protein erpa | CE139_RS04495 | Not Available | Positive | 971988 - 972338 | 12567.7 |
| anhydro-n-acetylmuramic acid kinase | CE139_RS04500 | Not Available | Negative | 972369 - 973454 | 38503.2 |
| peptidoglycan dd-metalloendopeptidase family protein | CE139_RS04505 | Not Available | Negative | 973456 - 974892 | 52099.3 |
| tyrosine--trna ligase | CE139_RS04510 | Not Available | Positive | 975060 - 976259 | 44309.4 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | CE139_RS04515 | Not Available | Positive | 976902 - 978068 | 41139.6 |
| duf2857 domain-containing protein | CE139_RS04520 | Not Available | Positive | 978186 - 978944 | 26371.5 |
| error-prone dna polymerase | CE139_RS04525 | Not Available | Negative | 978972 - 982046 | 114454.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





