Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | CE139_RS04380 | Not Available | Positive | 952168 - 953082 | 32472.9 |
| high-affinity branched-chain amino acid abc transporter permease livm | CE139_RS04385 | Not Available | Positive | 953087 - 954367 | 46231.5 |
| abc transporter atp-binding protein | CE139_RS04390 | Not Available | Positive | 954364 - 955239 | 32289.2 |
| abc transporter atp-binding protein | CE139_RS04395 | Not Available | Positive | 955236 - 955952 | 26473.3 |
| aconitase x | CE139_RS04400 | Not Available | Positive | 955955 - 957676 | 59738.9 |
| sdr family oxidoreductase | CE139_RS04405 | Not Available | Positive | 957927 - 958688 | 27241.4 |
| anti-sigma factor domain-containing protein | CE139_RS04410 | Not Available | Negative | 958698 - 959408 | 25711.1 |
| sigma-70 family rna polymerase sigma factor | CE139_RS04415 | Not Available | Negative | 959405 - 959932 | 19278.3 |
| duf3455 domain-containing protein | CE139_RS04420 | Not Available | Negative | 960018 - 960545 | 18634.2 |
| arnt family glycosyltransferase | CE139_RS04425 | Not Available | Positive | 960804 - 962432 | 59985.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





