Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cdp-diacylglycerol--serine o-phosphatidyltransferase | CE139_RS04180 | Not Available | Positive | 908422 - 909276 | 30395.1 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 909915 - 910030 | Not Available |
| excinuclease abc subunit uvra | CE139_RS04190 | Not Available | Negative | 910524 - 913358 | 104843.0 |
| mfs transporter | CE139_RS04195 | Not Available | Positive | 913628 - 915016 | 48862.2 |
| single-stranded dna-binding protein | CE139_RS04200 | Not Available | Positive | 915042 - 915605 | 20482.4 |
| Tmrna,resume consensus sequence (at 88): tatagttgccaacgacga | Not Available | Not Available | Positive | 915659 - 916011 | Not Available |
| ssra-binding protein smpb | CE139_RS04210 | Not Available | Negative | 916092 - 916568 | 17802.6 |
| type ii toxin-antitoxin system rata family toxin | CE139_RS04215 | Not Available | Positive | 916741 - 917175 | 15835.0 |
| rnfh family protein | CE139_RS04220 | Not Available | Positive | 917168 - 917473 | 11338.7 |
| outer membrane protein assembly factor bame | CE139_RS04225 | Not Available | Negative | 917481 - 918020 | 19195.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





