Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | CE139_RS03930 | Not Available | Negative | 850110 - 850901 | 29197.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | CE139_RS03935 | Not Available | Negative | 851180 - 852175 | 34832.4 |
| peptidylprolyl isomerase | CE139_RS03940 | Not Available | Negative | 852226 - 853521 | 47637.9 |
| lps-assembly protein lptd | CE139_RS03945 | Not Available | Negative | 853502 - 856306 | 104646.0 |
| aminoglycoside phosphotransferase family protein | CE139_RS03950 | Not Available | Positive | 856426 - 857448 | 38479.1 |
| n-acetylmuramate alpha-1-phosphate uridylyltransferase muru | CE139_RS03955 | Not Available | Positive | 857445 - 858110 | 23248.4 |
| dnaj domain-containing protein | CE139_RS03960 | Not Available | Positive | 858107 - 858871 | 27737.5 |
| duf3530 family protein | CE139_RS03965 | Not Available | Negative | 858846 - 859856 | 34890.4 |
| ribulose-phosphate 3-epimerase | CE139_RS03970 | Not Available | Positive | 859995 - 860672 | 24108.3 |
| phosphoglycolate phosphatase | CE139_RS03975 | Not Available | Positive | 860669 - 861349 | 24062.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





