Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine/glycine:cation symporter family protein | CE139_RS02100 | Not Available | Negative | 463948 - 465402 | 52036.4 |
| helix-turn-helix domain-containing protein | CE139_RS02105 | Not Available | Positive | 465674 - 466462 | 29812.6 |
| sensor domain-containing diguanylate cyclase | CE139_RS02110 | Not Available | Negative | 466459 - 467664 | 44437.3 |
| polyamine abc transporter substrate-binding protein | CE139_RS02115 | Not Available | Negative | 467809 - 468909 | 40419.7 |
| histone deacetylase family protein | CE139_RS02120 | Not Available | Negative | 468933 - 469964 | 36892.6 |
| cupin domain-containing protein | CE139_RS02125 | Not Available | Negative | 470079 - 470438 | 13253.5 |
| arac family transcriptional regulator | CE139_RS02130 | Not Available | Negative | 470485 - 471486 | 36348.2 |
| aspartate ammonia-lyase | CE139_RS02135 | Not Available | Negative | 471586 - 473019 | 51427.4 |
| lysr substrate-binding domain-containing protein | CE139_RS02140 | Not Available | Positive | 473174 - 474079 | 32816.8 |
| 4-hydroxyproline epimerase | CE139_RS02145 | Not Available | Positive | 474186 - 475124 | 32748.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





