Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc-dependent peptidase | CE139_RS24440 | Not Available | Positive | 5310222 - 5311058 | 31281.8 |
| inorganic diphosphatase | CE139_RS24445 | Not Available | Positive | 5311110 - 5311637 | 19297.1 |
| duf748 domain-containing protein | CE139_RS24450 | Not Available | Positive | 5312093 - 5313154 | 39706.2 |
| duf2857 domain-containing protein | CE139_RS24455 | Not Available | Negative | 5313612 - 5313956 | 13076.4 |
| threonine ammonia-lyase, biosynthetic | CE139_RS24460 | Not Available | Negative | 5314057 - 5315427 | 49894.9 |
| exodeoxyribonuclease vii small subunit | CE139_RS24465 | Not Available | Positive | 5315691 - 5315933 | 8659.19 |
| polyprenyl synthetase family protein | CE139_RS24470 | Not Available | Positive | 5315930 - 5316808 | 31003.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | CE139_RS24475 | Not Available | Positive | 5316960 - 5318909 | 69887.9 |
| duf2857 domain-containing protein | CE139_RS25950 | Not Available | Positive | 5320665 - 5321186 | 18444.5 |
| gtp cyclohydrolase ii | CE139_RS24485 | Not Available | Negative | 5321187 - 5321813 | 22579.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





