Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine phosphatase serb | CE139_RS24345 | Not Available | Negative | 5289475 - 5290629 | 40724.1 |
| ahpa/ytjb family protein | CE139_RS24350 | Not Available | Positive | 5290819 - 5292330 | 54675.0 |
| c13 family peptidase | CE139_RS24355 | Not Available | Positive | 5292351 - 5293889 | 55607.6 |
| oxidoreductase | CE139_RS24360 | Not Available | Positive | 5293978 - 5294619 | 23194.1 |
| lysr substrate-binding domain-containing protein | CE139_RS24365 | Not Available | Negative | 5294969 - 5295904 | 34950.3 |
| l-serine ammonia-lyase | CE139_RS24370 | Not Available | Positive | 5296031 - 5297407 | 48550.5 |
| antitoxin | CE139_RS24375 | Not Available | Positive | 5297473 - 5297697 | 8525.02 |
| type ii toxin-antitoxin system trna(fmet)-specific endonuclease vapc | CE139_RS24380 | Not Available | Positive | 5297697 - 5298110 | 15582.7 |
| ybak/ebsc family protein | CE139_RS24385 | Not Available | Positive | 5298151 - 5298627 | 16532.0 |
| hypothetical protein | CE139_RS25490 | Not Available | Negative | 5298615 - 5298743 | 4789.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





