Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea abc transporter permease subunit urtc | CE139_RS24100 | Not Available | Positive | 5235197 - 5236276 | 38569.1 |
| urea abc transporter atp-binding protein urtd | CE139_RS24105 | Not Available | Positive | 5236273 - 5237118 | 30562.8 |
| urea abc transporter atp-binding subunit urte | CE139_RS24110 | Not Available | Positive | 5237227 - 5237925 | 25625.3 |
| type ii 3-dehydroquinate dehydratase | CE139_RS24115 | Not Available | Positive | 5238072 - 5238515 | 15792.7 |
| shikimate dehydrogenase | CE139_RS24120 | Not Available | Positive | 5238520 - 5239374 | 29727.0 |
| ygiq family radical sam protein | CE139_RS24125 | Not Available | Negative | 5239534 - 5241801 | 84768.6 |
| amino acid permease | CE139_RS24130 | Not Available | Positive | 5242157 - 5243533 | 49669.5 |
| glucosyltransferase domain-containing protein | CE139_RS24135 | Not Available | Negative | 5243641 - 5245122 | 54755.9 |
| d-alanine--d-alanine ligase | CE139_RS24140 | Not Available | Negative | 5245204 - 5246220 | 36104.5 |
| replicative dna helicase | CE139_RS24145 | Not Available | Negative | 5246220 - 5247614 | 51272.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





