Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyse family translocator | CE139_RS23410 | Not Available | Positive | 5076561 - 5077163 | 21310.6 |
| mobh family relaxase | CE139_RS23415 | Not Available | Positive | 5077302 - 5079164 | 68395.4 |
| tyrosine-type recombinase/integrase | CE139_RS23420 | Not Available | Positive | 5079161 - 5080492 | 50762.1 |
| Trna-lys | Not Available | Not Available | Positive | 5080756 - 5080831 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 5080837 - 5080913 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 5080924 - 5080999 | Not Available |
| atp-dependent chaperone clpb | CE139_RS23440 | Not Available | Negative | 5081162 - 5083726 | 95191.1 |
| peptidoglycan editing factor pgef | CE139_RS23445 | Not Available | Negative | 5083858 - 5084589 | 25635.5 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | CE139_RS23450 | Not Available | Negative | 5084586 - 5085545 | 35347.5 |
| outer membrane protein assembly factor bamd | CE139_RS23455 | Not Available | Positive | 5085734 - 5086759 | 38396.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





