Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nuclear transport factor 2 family protein | CE139_RS22865 | Not Available | Positive | 4963774 - 4964244 | 17212.7 |
| duf4878 domain-containing protein | CE139_RS22870 | Not Available | Positive | 4964387 - 4964791 | 14501.5 |
| yiix/yebb-like n1pc/p60 family cysteine hydrolase | CE139_RS22875 | Not Available | Positive | 4964820 - 4965410 | 21698.4 |
| nadh:flavin oxidoreductase/nadh oxidase | CE139_RS22880 | Not Available | Negative | 4965459 - 4966562 | 40332.9 |
| single-stranded-dna-specific exonuclease recj | CE139_RS22885 | Not Available | Negative | 4966876 - 4968597 | 62458.4 |
| yaeq family protein | CE139_RS22890 | Not Available | Negative | 4968597 - 4969136 | 20591.5 |
| threonine synthase | CE139_RS22895 | Not Available | Negative | 4969349 - 4970758 | 51324.6 |
| homoserine dehydrogenase | CE139_RS22900 | Not Available | Negative | 4970805 - 4972109 | 46119.6 |
| thioredoxin fold domain-containing protein | CE139_RS22905 | Not Available | Negative | 4972170 - 4972895 | 26062.5 |
| site-specific tyrosine recombinase xerd | CE139_RS22910 | Not Available | Negative | 4972958 - 4973848 | 33163.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





