Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline abc transporter atp-binding protein | CE139_RS01425 | Not Available | Positive | 322436 - 323668 | 45294.2 |
| higa family addiction module antitoxin | CE139_RS01430 | Not Available | Negative | 323936 - 324238 | 11007.5 |
| type ii toxin-antitoxin system rele/pare family toxin | CE139_RS01435 | Not Available | Negative | 324333 - 324611 | 10693.8 |
| formyltetrahydrofolate deformylase | CE139_RS01440 | Not Available | Negative | 324860 - 325717 | 32324.7 |
| sarcosine oxidase subunit gamma | CE139_RS01445 | Not Available | Negative | 325816 - 326445 | 22694.1 |
| sarcosine oxidase subunit alpha | CE139_RS01450 | Not Available | Negative | 326461 - 329481 | 109265.0 |
| sarcosine oxidase subunit delta | CE139_RS01455 | Not Available | Negative | 329478 - 329777 | 11615.4 |
| sarcosine oxidase subunit beta family protein | CE139_RS01460 | Not Available | Negative | 329789 - 331039 | 45506.2 |
| serine hydroxymethyltransferase | CE139_RS01465 | Not Available | Negative | 331118 - 332371 | 44771.3 |
| duf2857 domain-containing protein | CE139_RS25565 | Not Available | Positive | 332587 - 333357 | 29205.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





