Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase family protein | CE139_RS13890 | Not Available | Negative | 2977735 - 2979216 | 53708.9 |
| nad(p)/fad-dependent oxidoreductase | CE139_RS13895 | Not Available | Negative | 2979230 - 2980489 | 45237.8 |
| dihydrodipicolinate synthase family protein | CE139_RS13900 | Not Available | Negative | 2980680 - 2981558 | 31744.0 |
| amino acid abc transporter permease | CE139_RS13905 | Not Available | Negative | 2981584 - 2982249 | 24038.3 |
| amino acid abc transporter permease | CE139_RS13910 | Not Available | Negative | 2982257 - 2982928 | 24900.3 |
| amino acid abc transporter atp-binding protein | CE139_RS13915 | Not Available | Negative | 2982939 - 2983742 | 29957.7 |
| substrate-binding periplasmic protein | CE139_RS13920 | Not Available | Negative | 2983815 - 2984504 | 24855.8 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | CE139_RS13925 | Not Available | Positive | 2985011 - 2985426 | 15334.2 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2985680 - 2985795 | Not Available |
| uvry/sira/gaca family response regulator transcription factor | CE139_RS13935 | Not Available | Positive | 2986545 - 2987189 | 23413.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





